1QFK Hydrolase Hydrolase Inhibitor date Apr 12, 1999
title Structure Of Human Factor Viia And Its Implications For The Of Blood Coagulation
authors A.C.W.Pike, A.M.Brzozowski, S.M.Roberts, O.H.Olsen, E.Persson
compound source
Molecule: Coagulation Factor Viia Light Chain
Chain: L
Fragment: Unp Residues 109-212
Synonym: Fviia
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Expression_system: Mesocricetus Auratus
Expression_system_common: Golden Hamster
Expression_system_taxid: 10036
Expression_system_cell_line: Bhk570
Expression_system_collection: Atcc Crl 1632
Expression_system_organelle: Nucleus
Expression_system_cellular_location: Secreted
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Zem219b
Expression_system_gene: Factor Vii

Molecule: Coagulation Factor Viia Heavy Chain
Chain: H
Fragment: Unp Residues 213-466
Synonym: Fviia
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Expression_system: Mesocricetus Auratus
Expression_system_common: Golden Hamster
Expression_system_taxid: 10036
Expression_system_cell_line: Bhk570
Expression_system_collection: Atcc Crl 1632
Expression_system_organelle: Nucleus
Expression_system_cellular_location: Secreted
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Zem219b
Expression_system_gene: Factor Vii
symmetry Space Group: P 43 2 2
R_factor 0.215 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.300 115.300 98.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 0Z6, CA, CH2, DPN, FUC, FUL, GLC, NAG enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1J9C, 1KLJ, 1W0Y
Primary referenceStructure of human factor VIIa and its implications for the triggering of blood coagulation., Pike AC, Brzozowski AM, Roberts SM, Olsen OH, Persson E, Proc Natl Acad Sci U S A 1999 Aug 3;96(16):8925-30. PMID:10430872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1qfk.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1QFK
  • CSU: Contacts of Structural Units for 1QFK
  • Likely Quarternary Molecular Structure file(s) for 1QFK
  • Structure Factors (132 Kb)
  • Retrieve 1QFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QFK from S2C, [Save to disk]
  • Re-refined 1qfk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QFK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QFK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qfkh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1qfkl1, region L:49-86 [Jmol] [rasmolscript] [script source]
        - Domain d1qfkl2, region L:87-144 [Jmol] [rasmolscript] [script source]
  • Fold representative 1qfk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qfk] [1qfk_L] [1qfk_H] [1qfk_C]
  • SWISS-PROT database: [P08709]
  • Domain organization of [FA7_HUMAN] by SWISSPFAM
  • Domains found in 1QFK: [EGF] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1QFK with the sequences similar proteins can be viewed for 1QFK's classification [FA7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1QFK
  • Community annotation for 1QFK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science