1J9C	Hydrolase Hydrolase Inhibitor	date	May 24, 2001
title	Crystal Structure Of Tissue Factor-Factor Viia Complex
authors	M.Huang, W.Ruf, T.S.Edgington, I.A.Wilson
compound		source
Molecule: Tissue Factor Chain: T Synonym: Tf, Coagulation Factor III Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Factor Viia Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Bhk
Molecule: Factor Viia Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Bhk
symmetry	Space Group: P 1 21 1	R_factor 0.221 R_Free 0.299
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.038 68.302 78.438 90.00 92.12 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	0Z6, ARM, CA, DPN, FUL, GLC, NAG	enzyme
related structures	by homologous chain: 1AHW, 1DVA, 1QFK, 1W0Y

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (1j9c.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 1J9C CSU: Contacts of Structural Units for 1J9C Likely Quarternary Molecular Structure file(s) for 1J9C Retrieve 1J9C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J9C from S2C, [Save to disk]

View 1J9C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1J9C

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1J9C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j9ch_, region H [Jmol] [rasmolscript] [script source]     - Domain d1j9cl1, region L:48-86 [Jmol] [rasmolscript] [script source]     - Domain d1j9cl2, region L:87-142 [Jmol] [rasmolscript] [script source]     - Domain d1j9ct1, region T:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1j9ct2, region T:107-210 [Jmol] [rasmolscript] [script source] Fold representative 1j9c from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j9c_A] [1j9c_H] [1j9c_L] [1j9c_T] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 1J9C: [EGF] [Tryp_SPc ] by SMART Alignments of the sequence of 1J9C with the sequences similar proteins can be viewed for 1J9C's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1J9C

Community annotation for 1J9C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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