1J9C Hydrolase Hydrolase Inhibitor date May 24, 2001
title Crystal Structure Of Tissue Factor-Factor Viia Complex
authors M.Huang, W.Ruf, T.S.Edgington, I.A.Wilson
compound source
Molecule: Tissue Factor
Chain: T
Synonym: Tf, Coagulation Factor III
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Factor Viia Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Bhk

Molecule: Factor Viia Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Bhk
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.038 68.302 78.438 90.00 92.12 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 0Z6, ARM, CA, DPN, FUL, GLC, NAG enzyme
related structures by homologous chain: 1AHW, 1DVA, 1QFK, 1W0Y
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1j9c.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 1J9C
  • CSU: Contacts of Structural Units for 1J9C
  • Likely Quarternary Molecular Structure file(s) for 1J9C
  • Retrieve 1J9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J9C from S2C, [Save to disk]
  • View 1J9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J9C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J9C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j9ch_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1j9cl1, region L:48-86 [Jmol] [rasmolscript] [script source]
        - Domain d1j9cl2, region L:87-142 [Jmol] [rasmolscript] [script source]
        - Domain d1j9ct1, region T:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1j9ct2, region T:107-210 [Jmol] [rasmolscript] [script source]
  • Fold representative 1j9c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j9c] [1j9c_T] [1j9c_L] [1j9c_A] [1j9c_H]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1J9C: [EGF] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 1J9C with the sequences similar proteins can be viewed for 1J9C's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1J9C
  • Community annotation for 1J9C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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