1W0Y Hydrolase date Jun 15, 2004
title Tf7a_3771 Complex
authors D.W.Banner, A.D'Arcy, K.Groebke-Zbinden, J.Ackermann, D.Kirchhof H.Ji, T.B.Tschopp, S.Wallbaum, L.Weber
compound source
Molecule: Blood Coagulation Factor Viia
Chain: H
Fragment: Factor Vii Heavy Chain, Residues 213-466
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Baby Hamster Kidney Cells (Bhk

Molecule: Blood Coagulation Factor Viia
Chain: L
Fragment: Factor Vii Heavy Chain, Residues 61-202
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa, Novoseven;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Baby Hamster Kidney Cells (Bhk

Molecule: Tissue Factor
Chain: T
Fragment: Extracellular Domain, Residues 38-242
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Soluble Tissue Factor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.338 82.378 123.963 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 771, BGC, CA, CAC, CGU, FUC BindingDB enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1J9C, 1KLJ, 1QFK, 1TFH
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceDesign of selective phenylglycine amide tissue factor/factor VIIa inhibitors., Groebke Zbinden K, Banner DW, Ackermann J, D'Arcy A, Kirchhofer D, Ji YH, Tschopp TB, Wallbaum S, Weber L, Bioorg Med Chem Lett. 2005 Feb 1;15(3):817-22. PMID:15664864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (1w0y.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 1W0Y
  • CSU: Contacts of Structural Units for 1W0Y
  • Likely Quarternary Molecular Structure file(s) for 1W0Y
  • Structure Factors (220 Kb)
  • Retrieve 1W0Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W0Y from S2C, [Save to disk]
  • Re-refined 1w0y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W0Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W0Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W0Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w0y] [1w0y_H] [1w0y_T] [1w0y_L]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1W0Y: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 1W0Y
  • Community annotation for 1W0Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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