1AD6 Transcription Regulation date Feb 21, 1997
title Domain A Of Human Retinoblastoma Tumor Suppressor
authors H.Y.Kim, Y.Cho
compound source
Molecule: Retinoblastoma Tumor Suppressor
Chain: A
Fragment: Domain A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.600 68.040 80.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1N4M, 1O9K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural similarity between the pocket region of retinoblastoma tumour suppressor and the cyclin-box., Kim HY, Cho Y, Nat Struct Biol 1997 May;4(5):390-5. PMID:9145110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1ad6.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1AD6
  • Likely Quarternary Molecular Structure file(s) for 1AD6
  • Structure Factors (64 Kb)
  • Retrieve 1AD6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AD6 from S2C, [Save to disk]
  • Re-refined 1ad6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AD6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AD6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AD6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ad6__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ad6_A] [1ad6]
  • SWISS-PROT database: [P06400]
  • Domain organization of [RB_HUMAN] by SWISSPFAM
  • Domain found in 1AD6: [RB_A ] by SMART
  • Other resources with information on 1AD6
  • Community annotation for 1AD6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science