1N4M Structure of Rb tumor suppressor bound to the transactivation domain of E2F-2 date
authors Lee, C., Chang, J.H., Lee, H.S., Cho, Y.
compound source
symmetry
R_factor
R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
related structures by homologous chain: 1AD6, 1GUX, 1O9K
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the recognition of the E2F transactivation domain by the retinoblastoma tumor suppressor., Lee C, Chang JH, Lee HS, Cho Y, Genes Dev 2002 Dec 15;16(24):3199-212. PMID:12502741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1n4m.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (1n4m.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (1n4m.pdb3.gz) 65 Kb
  • Biological Unit Coordinates (1n4m.pdb4.gz) 62 Kb
  • CSU: Contacts of Structural Units for 1N4M
  • Likely Quarternary Molecular Structure file(s) for 1N4M
  • Retrieve 1N4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N4M from S2C, [Save to disk]
    • View 1N4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N4M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N4M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n4ma1, region A:380-581 [Jmol] [rasmolscript] [script source]
        - Domain d1n4ma2, region A:643-785 [Jmol] [rasmolscript] [script source]
        - Domain d1n4mb1, region B:380-581 [Jmol] [rasmolscript] [script source]
        - Domain d1n4mb2, region B:643-785 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n4m] [1n4m_E] [1n4m_D] [1n4m_C] [1n4m_B] [1n4m_A]
  • SWISS-PROT database: [Q14209] [P06400]
  • Domain organization of [E2F2_HUMAN] [RB_HUMAN] by SWISSPFAM
  • Domains found in 1N4M: [CYCLIN] [RB_A ] by SMART
    • Other resources with information on 1N4M
  • Community annotation for 1N4M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science