1ADO Lyase date Dec 02, 1996
title Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
authors N.S.Blom, J.Sygusch
compound source
Molecule: Aldolase
Chain: A, B, C, D
Ec: 4.1.2.13
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Muscle
symmetry Space Group: P 1 21 1
R_factor 0.162 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.880 57.470 85.030 90.00 102.70 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 13P, SO4 enzyme Lyase E.C.4.1.2.13 BRENDA
related structures by homologous chain: 1FBA, 1ZAL
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceProduct binding and role of the C-terminal region in class I D-fructose 1,6-bisphosphate aldolase., Blom N, Sygusch J, Nat Struct Biol 1997 Jan;4(1):36-9. PMID:8989320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (1ado.pdb1.gz) 338 Kb
  • LPC: Ligand-Protein Contacts for 1ADO
  • CSU: Contacts of Structural Units for 1ADO
  • Likely Quarternary Molecular Structure file(s) for 1ADO
  • Retrieve 1ADO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ADO from S2C, [Save to disk]
  • View 1ADO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ADO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ADO, from MSDmotif at EBI
  • Genome occurence of 1ADO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1adoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1adob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1adoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1adod_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1ado from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ado_B] [1ado_D] [1ado_A] [1ado] [1ado_C]
  • SWISS-PROT database: [P00883]
  • Domain organization of [ALDOA_RABIT] by SWISSPFAM
  • Other resources with information on 1ADO
  • Community annotation for 1ADO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1ADO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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