1ZAL Lyase date Apr 06, 2005
title Fructose-1,6-Bisphosphate Aldolase From Rabbit Muscle In Com Partially Disordered Tagatose-1,6-Bisphosphate, A Weak Comp Inhibitor
authors M.St-Jean, J.Lafrance-Vanasse, B.Liotard, J.Sygusch
compound source
Molecule: Fructose-Bisphosphate Aldolase A
Chain: A, B, C, D
Synonym: Muscle-Type Aldolase
Ec: 4.1.2.13
Engineered: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Aldoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 Si (Invitrogen)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppb14
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.052 103.216 84.546 90.00 98.56 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand PO4 enzyme Lyase E.C.4.1.2.13 BRENDA
related structures by homologous chain: 1ADO, 1ZAJ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHigh resolution reaction intermediates of rabbit muscle fructose-1,6-bisphosphate aldolase: substrate cleavage and induced fit., St-Jean M, Lafrance-Vanasse J, Liotard B, Sygusch J, J Biol Chem 2005 Jul 22;280(29):27262-70. Epub 2005 May 3. PMID:15870069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (1zal.pdb1.gz) 261 Kb
  • LPC: Ligand-Protein Contacts for 1ZAL
  • CSU: Contacts of Structural Units for 1ZAL
  • Likely Quarternary Molecular Structure file(s) for 1ZAL
  • Structure Factors (1794 Kb)
  • Retrieve 1ZAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZAL from S2C, [Save to disk]
  • Re-refined 1zal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZAL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZAL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zal_A] [1zal_D] [1zal] [1zal_B] [1zal_C]
  • SWISS-PROT database: [P00883]
  • Domain organization of [ALDOA_RABIT] by SWISSPFAM
  • Other resources with information on 1ZAL
  • Community annotation for 1ZAL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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