1AGP Oncogene Protein date Mar 29, 1993
title Three-Dimensional Structures And Properties Of A Transformin Nontransforming Gly-12 Mutant Of P21-H-Ras
authors S.M.Franken, A.J.Scheidig, A.Wittinghofer, R.S.Goody
compound source
Molecule: C-H-Ras P21 Protein
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.910 39.810 56.100 90.00 107.40 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GNP, MG enzyme
related structures by homologous chain: 221P, 2Q21
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structures and properties of a transforming and a nontransforming glycine-12 mutant of p21H-ras., Franken SM, Scheidig AJ, Krengel U, Rensland H, Lautwein A, Geyer M, Scheffzek K, Goody RS, Kalbitzer HR, Pai EF, et al., Biochemistry 1993 Aug 24;32(33):8411-20. PMID:8357792
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1agp.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1AGP
  • CSU: Contacts of Structural Units for 1AGP
  • Likely Quarternary Molecular Structure file(s) for 1AGP
  • Retrieve 1AGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AGP from S2C, [Save to disk]
  • View 1AGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AGP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1AGP, from MSDmotif at EBI
  • Genome occurence of 1AGP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1agp__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1agp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1agp_A] [1agp]
  • SWISS-PROT database: [P01112]
  • Domain organization of [RASH_HUMAN] by SWISSPFAM
  • Domain found in 1AGP: [RAS ] by SMART
  • Other resources with information on 1AGP
  • Community annotation for 1AGP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1AGP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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