1AUG	Thiol Protease	date	Aug 26, 1997
title	Crystal Structure Of The Pyroglutamyl Peptidase I From Bacil Amyloliquefaciens
authors	Y.Odagaki, A.Hayashi, K.Okada, K.Hirotsu, T.Kabashima, K.Ito, T.Yo D.Tsuru, M.Sato, J.Clardy
compound		source
Molecule: Pyroglutamyl Peptidase-1 Chain: A, B, C, D Synonym: Pgp-1, Pyrrolidone-Carboxylate Peptidase Ec: 3.4.19.3 Engineered: Yes		Organism_scientific: Bacillus Amyloliquefaciens Organism_taxid: 1390 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pbpg 1
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.712 80.800 69.157 90.00 92.75 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Hydrolase E.C.3.4.19.3 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	The crystal structure of pyroglutamyl peptidase I from Bacillus amyloliquefaciens reveals a new structure for a cysteine protease., Odagaki Y, Hayashi A, Okada K, Hirotsu K, Kabashima T, Ito K, Yoshimoto T, Tsuru D, Sato M, Clardy J, Structure Fold Des 1999 Apr 15;7(4):399-411. PMID:10196127

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk] Biological Unit Coordinates (1aug.pdb1.gz) 156 Kb CSU: Contacts of Structural Units for 1AUG Likely Quarternary Molecular Structure file(s) for 1AUG Structure Factors (436 Kb) Retrieve 1AUG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1AUG from S2C, [Save to disk] Re-refined 1aug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1AUG in 3D

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Visual 3D analysis of 1AUG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1AUG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1auga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1augb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1augc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1augd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1aug_D] [1aug_B] [1aug] [1aug_C] [1aug_A] SWISS-PROT database: [P46107] Domain organization of [PCP_BACAM] by SWISSPFAM

Other resources with information on 1AUG

Community annotation for 1AUG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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