1AVZ	Complex (Myristylation Transferase)	date	Sep 23, 1997
title	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
authors	S.Arold, P.Franken, C.Dumas
compound		source
Molecule: Negative Factor Chain: A, B Fragment: Conserved Core Domain Synonym: Nef, F-Protein Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Variant: Lai Isolate Cell_line: Bl21 Gene: Hiv-1 Nef Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pgex-2t
Molecule: Fyn Tyrosine Kinase Chain: C Fragment: Src-Homology 3 Domain Synonym: Sh3 Domain Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Bl21 Gene: Fyn Tyrosine Kinase Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pgex-2t
symmetry	Space Group: P 65 2 2	R_factor 0.220 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.200 108.200 223.700 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand		enzyme	Transferase E.C.2.7.1.112 BRENDA
related structures	by homologous chain: 1AVV, 1EFN, 1KSW, 1QWF
Gene Ontology	Chain Function Process Component A, B
Primary reference	The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling., Arold S, Franken P, Strub MP, Hoh F, Benichou S, Benarous R, Dumas C, Structure 1997 Oct 15;5(10):1361-72. PMID:9351809

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (1avz.pdb1.gz) 41 Kb CSU: Contacts of Structural Units for 1AVZ Likely Quarternary Molecular Structure file(s) for 1AVZ Retrieve 1AVZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1AVZ from S2C, [Save to disk]

View 1AVZ in 3D

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Visual 3D analysis of 1AVZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1AVZ, from MSDmotif at EBI Genome occurence of 1AVZ's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1avza_, region A [Jmol] [rasmolscript] [script source]     - Domain d1avzb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1avzc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1avz_C] [1avz] [1avz_A] [1avz_B] SWISS-PROT database: [P06241] [P03406] Domain organization of [FYN_HUMAN] [NEF_HV1BR] by SWISSPFAM Domain found in 1AVZ: [SH3 ] by SMART

Other resources with information on 1AVZ

Community annotation for 1AVZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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