1EFN HIV-1 NEF PROTEIN IN COMPLEX WITH R96I MUTANT FYN SH3 DOMAIN date
authors Lee, C.H., Kuriyan, J.
compound source
symmetry
R_factor
R_Free 0.2820000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand PBM enzyme
related structures by homologous chain: 1AVZ, 1G83, 1M27
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceCrystal structure of the conserved core of HIV-1 Nef complexed with a Src family SH3 domain., Lee CH, Saksela K, Mirza UA, Chait BT, Kuriyan J, Cell 1996 Jun 14;85(6):931-42. PMID:8681387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1efn.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1EFN
  • CSU: Contacts of Structural Units for 1EFN
  • Likely Quarternary Molecular Structure file(s) for 1EFN
  • Structure Factors (283 Kb)
  • Retrieve 1EFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EFN from S2C, [Save to disk]
  • Re-refined 1efn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1EFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EFN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EFN, from MSDmotif at EBI
  • Genome occurence of 1EFN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1efna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1efnb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1efnc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1efnd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1efn_C] [1efn_D] [1efn_A] [1efn_B] [1efn]
  • SWISS-PROT database: [P06241] [P03406]
  • Domain organization of [FYN_HUMAN] [NEF_HV1BR] by SWISSPFAM
  • Domain found in 1EFN: [SH3 ] by SMART
    • Other resources with information on 1EFN
  • Community annotation for 1EFN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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