1M27 Crystal structure of SAP/FynSH3/SLAM ternary complex date
authors Chan, B., Griesbach, J., Song, H.K., Poy, F., Terhorst, C., Eck, M.J.
compound source
symmetry
R_factor
R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand FLC enzyme
related structures by homologous chain: 1D4W, 1EFN, 1KA6, 2PTK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSAP couples Fyn to SLAM immune receptors., Chan B, Lanyi A, Song HK, Griesbach J, Simarro-Grande M, Poy F, Howie D, Sumegi J, Terhorst C, Eck MJ, Nat Cell Biol 2003 Feb;5(2):155-60. PMID:12545174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1m27.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1M27
  • CSU: Contacts of Structural Units for 1M27
  • Likely Quarternary Molecular Structure file(s) for 1M27
  • Structure Factors (76 Kb)
  • Retrieve 1M27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M27 from S2C, [Save to disk]
  • Re-refined 1m27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M27
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M27, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m27a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m27c_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m27_B] [1m27] [1m27_A] [1m27_C]
  • SWISS-PROT database: [P06241] [O60880] [Q13291]
  • Domain organization of [FYN_HUMAN] [SH21A_HUMAN] [SLAF1_HUMAN] by SWISSPFAM
  • Domains found in 1M27: [SH2] [SH3 ] by SMART
  • Other resources with information on 1M27
  • Community annotation for 1M27 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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