1B0L Metal Binding Protein date Nov 11, 1998
title Recombinant Human Diferric Lactoferrin
authors E.N.Baker, G.B.Jameson, X.Sun
compound source
Molecule: Protein (Lactoferrin)
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Aspergillus Awamori
Expression_system_taxid: 105351
Expression_system_atcc_number: 22342
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.250 97.530 55.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CO3, FE enzyme
related structures by homologous chain: 1HSE, 1LFG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of recombinant human lactoferrin expressed in Aspergillus awamori., Sun XL, Baker HM, Shewry SC, Jameson GB, Baker EN, Acta Crystallogr D Biol Crystallogr 1999 Feb;55 ( Pt 2):403-7. PMID:10089347
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1b0l.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 1B0L
  • CSU: Contacts of Structural Units for 1B0L
  • Likely Quarternary Molecular Structure file(s) for 1B0L
  • Retrieve 1B0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B0L from S2C, [Save to disk]
    • View 1B0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1B0L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B0L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b0la1, region A:1-334 [Jmol] [rasmolscript] [script source]
        - Domain d1b0la2, region A:335-691 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b0l] [1b0l_A]
  • SWISS-PROT database: [P02788]
  • Domain organization of [TRFL_HUMAN] by SWISSPFAM
  • Domain found in 1B0L: [TR_FER ] by SMART
    • Other resources with information on 1B0L
  • Community annotation for 1B0L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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