1B2I Hydrolase date Sep 24, 1999
title Kringle 2 Domain Of Human Plasminogen: Nmr Solution Structure Of Trans-4-Aminomethylcyclohexane-1-Carboxylic Acid (Amcha) Complex
authors D.N.Marti, J.Schaller, M.Llinas
compound source
Molecule: Protein (Plasminogen)
Chain: A
Fragment: Kringle 2 Domain
Ec: 3.4.21.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-8
methodSolution NMR
ligand AMH BindingDB enzyme Hydrolase E.C.3.4.21.7 BRENDA
related structures by homologous chain: 1I5K
Primary referenceSolution structure and dynamics of the plasminogen kringle 2-AMCHA complex: 3(1)-helix in homologous domains., Marti DN, Schaller J, Llinas M, Biochemistry 1999 Nov 30;38(48):15741-55. PMID:10625440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (447 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1B2I
  • CSU: Contacts of Structural Units for 1B2I
  • Original NMR restraints for 1B2I from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1B2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B2I from S2C, [Save to disk]
  • View 1B2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B2I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1B2I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b2ia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1b2i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b2i] [1b2i_A]
  • SWISS-PROT database: [P00747]
  • Domain organization of [PLMN_HUMAN] by SWISSPFAM
  • Domain found in 1B2I: [KR ] by SMART
  • Other resources with information on 1B2I
  • Community annotation for 1B2I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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