1BAF 2.9 ANGSTROMS RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN date
authors Leahy, D.J., Brunger, A.T., Fox, R.O., Hynes, T.R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand NPP enzyme
related structures by homologous chain: 1FH5, 1KYO, 1NLD, 1NSN
Primary reference2.9 A resolution structure of an anti-dinitrophenyl-spin-label monoclonal antibody Fab fragment with bound hapten., Brunger AT, Leahy DJ, Hynes TR, Fox RO, J Mol Biol. 1991 Sep 5;221(1):239-56. PMID:1920408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1baf.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1BAF
  • CSU: Contacts of Structural Units for 1BAF
  • Likely Quarternary Molecular Structure file(s) for 1BAF
  • Retrieve 1BAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BAF from S2C, [Save to disk]
    • View 1BAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BAF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BAF, from MSDmotif at EBI
  • Genome occurence of 1BAF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bafh1, region H:1-115 [Jmol] [rasmolscript] [script source]
        - Domain d1bafh2, region H:116-217 [Jmol] [rasmolscript] [script source]
        - Domain d1bafl1, region L:1-108 [Jmol] [rasmolscript] [script source]
        - Domain d1bafl2, region L:109-214 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1baf_L] [1baf_H] [1baf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1BAF: [IG_like] [IGv ] by SMART
    • Other resources with information on 1BAF
  • Community annotation for 1BAF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1BAF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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