1FH5 CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MONOCLONAL ANTIBODY MAK33 date
authors Augustine, J.G., Calle, A.de.la., Knarr, G., Buchner, J., Frederick, C.A.
compound source
symmetry
R_factor
R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
related structures by homologous chain: 1BAF, 1HIM, 1NLD, 1RZK
Primary referenceThe crystal structure of the fab fragment of the monoclonal antibody MAK33. Implications for folding and interaction with the chaperone bip., Augustine JG, de La Calle A, Knarr G, Buchner J, Frederick CA, J Biol Chem 2001 Feb 2;276(5):3287-94. PMID:11036070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1fh5.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 1FH5
  • Likely Quarternary Molecular Structure file(s) for 1FH5
  • Structure Factors (131 Kb)
  • Retrieve 1FH5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FH5 from S2C, [Save to disk]
  • Re-refined 1fh5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FH5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FH5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FH5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fh5h2, region H:121-215 [Jmol] [rasmolscript] [script source]
        - Domain d1fh5h1, region H:4-120 [Jmol] [rasmolscript] [script source]
        - Domain d1fh5l2, region L:109-214 [Jmol] [rasmolscript] [script source]
        - Domain d1fh5l1, region L:2-108 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fh5] [1fh5_L] [1fh5_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1FH5: [IG_like] [IGv ] by SMART
  • Other resources with information on 1FH5
  • Community annotation for 1FH5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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