1BHM Hydrolase Dna date Jul 12, 1995
title Restriction Endonuclease Bamhi Complex With Dna
authors A.K.Aggarwal, M.Newman
compound source
Molecule: Dna (5'-D(Tpaptpgpgpaptpcpcpaptpa)- 3');
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Bamhi (E.C.3.1.21.4))
Chain: A, B
Synonym: R. Bamhi
Ec: 3.1.21.4
Engineered: Yes

Organism_scientific: Bacillus Amyloliquefaciens
Organism_taxid: 1390
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.800 81.900 68.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.1.21.4 BRENDA
related structures by homologous chain: 2BAM
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceStructure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding., Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK, Science 1995 Aug 4;269(5224):656-63. PMID:7624794
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1bhm.pdb1.gz) 78 Kb
  • CSU: Contacts of Structural Units for 1BHM
  • Likely Quarternary Molecular Structure file(s) for 1BHM
  • Retrieve 1BHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BHM from S2C, [Save to disk]
  • View 1BHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BHM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BHM, from MSDmotif at EBI
  • Genome occurence of 1BHM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bhma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bhmb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1bhm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bhm_C] [1bhm_D] [1bhm] [1bhm_A] [1bhm_B]
  • SWISS-PROT database: [P23940]
  • Domain organization of [T2BA_BACAM] by SWISSPFAM
  • Other resources with information on 1BHM
  • Community annotation for 1BHM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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