1BII Complex (Mhc I Peptide) date Jun 11, 1998
title The Crystal Structure Of H-2dd Mhc Class I In Complex With The Hiv-1 Derived Peptide P18-110
authors A.Achour, K.Persson, R.A.Harris, J.Sundback, C.L.Sentman, Y.Lindqvist, G.Schneider, K.Karre
compound source
Molecule: Mhc Class I H-2dd
Chain: A
Fragment: Heavy Chain, Extracellular Domains
Synonym: Dd
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet-3a

Molecule: Beta-2 Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_plasmid: Pet-8c

Molecule: Decameric Peptide
Chain: P
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.278 R_Free 0.323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.260 92.530 108.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1MWA, 1QR1
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe crystal structure of H-2Dd MHC class I complexed with the HIV-1-derived peptide P18-I10 at 2.4 A resolution: implications for T cell and NK cell recognition., Achour A, Persson K, Harris RA, Sundback J, Sentman CL, Lindqvist Y, Schneider G, Karre K, Immunity 1998 Aug;9(2):199-208. PMID:9729040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1bii.pdb1.gz) 66 Kb
  • CSU: Contacts of Structural Units for 1BII
  • Likely Quarternary Molecular Structure file(s) for 1BII
  • Retrieve 1BII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BII from S2C, [Save to disk]
  • View 1BII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BII
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BII, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1biia2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1biia1, region A:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1biib_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1bii from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bii] [1bii_A] [1bii_B] [1bii_P]
  • SWISS-PROT database: [P01887] [P01900]
  • Domain organization of [B2MG_MOUSE] [HA12_MOUSE] by SWISSPFAM
  • Domain found in 1BII: [IGc1 ] by SMART
  • Other resources with information on 1BII
  • Community annotation for 1BII at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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