1BII THE CRYSTAL STRUCTURE OF H-2DD MHC CLASS I IN COMPLEX WITH THE HIV-1 DERIVED PEPTIDE P18-110 date
authors Achour, A., Persson, K., Harris, R.A., Sundback, J., Sentman, C.L., Lindqvist, Y., Schneider, G., Karre, K.
compound source
symmetry
R_factor
R_Free 0.323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
related structures by homologous chain: 1MWA, 1QR1
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe crystal structure of H-2Dd MHC class I complexed with the HIV-1-derived peptide P18-I10 at 2.4 A resolution: implications for T cell and NK cell recognition., Achour A, Persson K, Harris RA, Sundback J, Sentman CL, Lindqvist Y, Schneider G, Karre K, Immunity 1998 Aug;9(2):199-208. PMID:9729040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1bii.pdb1.gz) 66 Kb
  • CSU: Contacts of Structural Units for 1BII
  • Likely Quarternary Molecular Structure file(s) for 1BII
  • Retrieve 1BII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BII from S2C, [Save to disk]
  • View 1BII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BII
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BII, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1biia2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1biia1, region A:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1biib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bii] [1bii_A] [1bii_B] [1bii_P]
  • SWISS-PROT database: [P01887] [P01900]
  • Domain organization of [B2MG_MOUSE] [HA12_MOUSE] by SWISSPFAM
  • Domain found in 1BII: [IGc1 ] by SMART
  • Other resources with information on 1BII
  • Community annotation for 1BII at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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