1MWA Immune System date Sep 27, 2002
title 2ch-2kbm3dev8 Allogeneic Complex
authors J.G.Luz, M.D.Huang, K.C.Garcia, M.G.Rudolph, L.Teyton, I.A.Wilson
compound source
Molecule: 2c T Cell Receptor Alpha Chain
Chain: A, C
Synonym: 2c Alpha Chain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Metalloth. Promoter

Molecule: 2c T Cell Receptor Beta Chain
Chain: B, D
Synonym: 2c Beta Chain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Metalloth. Promoter

Molecule: H-2kbm3 Mhc Class I Molecule Heavy Chain
Chain: H, I
Synonym: H-2kbm3 Heavy Chain, H-2 Class I Histocompatibilit K-B Alpha Chain;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Metalloth. Promoter

Molecule: Microglobulin Mhc Light Chain
Chain: L, M
Synonym: Microglobulin Light Chain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: S2
Expression_system_vector_type: Metalloth. Promoter

Molecule: Dev8
Chain: P, Q
Fragment: Residues 54-61
Engineered: Yes
Other_details: Derived From Nadh-Ubiquinone Oxidoreductase Subunit

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Is Naturally Found In Mus Musculus (Mouse).
symmetry Space Group: P 21 21 2
R_factor 0.284 R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
297.899 95.942 84.735 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACY, BMA, GOL, NAG enzyme
note 1MWA supersedes 1JTR
related structures by homologous chain: 1BII, 1I9E, 1LP9, 1S7X, 1SBB, 1U3H
Gene
Ontology
ChainFunctionProcessComponent
A, C


M, L


Primary referenceStructural comparison of allogeneic and syngeneic T cell receptor-peptide-major histocompatibility complex complexes: a buried alloreactive mutation subtly alters peptide presentation substantially increasing V(beta) Interactions., Luz JG, Huang M, Garcia KC, Rudolph MG, Apostolopoulos V, Teyton L, Wilson IA, J Exp Med. 2002 May 6;195(9):1175-86. PMID:11994422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (1mwa.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (1mwa.pdb2.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 1MWA
  • CSU: Contacts of Structural Units for 1MWA
  • Likely Quarternary Molecular Structure file(s) for 1MWA
  • Structure Factors (760 Kb)
  • Retrieve 1MWA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MWA from S2C, [Save to disk]
  • Re-refined 1mwa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MWA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MWA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MWA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mwaa1, region A:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1mwaa2, region A:118-213 [Jmol] [rasmolscript] [script source]
        - Domain d1mwab1, region B:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1mwab2, region B:118-247 [Jmol] [rasmolscript] [script source]
        - Domain d1mwac1, region C:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1mwac2, region C:118-213 [Jmol] [rasmolscript] [script source]
        - Domain d1mwad1, region D:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1mwad2, region D:118-247 [Jmol] [rasmolscript] [script source]
        - Domain d1mwah2, region H:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1mwah1, region H:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1mwai2, region I:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1mwai1, region I:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1mwal_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1mwam_, region M [Jmol] [rasmolscript] [script source]
  • Fold representative 1mwa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mwa_P] [1mwa_L] [1mwa_M] [1mwa_H] [1mwa_Q] [1mwa_D] [1mwa] [1mwa_C] [1mwa_B] [1mwa_I] [1mwa_A]
  • SWISS-PROT database: [P01887] [P01901] [P01851] [P01738]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [TCB2_MOUSE] [TVA1_MOUSE] by SWISSPFAM
  • Domains found in 1MWA: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 1MWA
  • Community annotation for 1MWA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science