1U3H Immune System date Jul 21, 2004
title Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc Cla Molecule At 2.4 A
authors J.Maynard, K.Petersson, D.H.Wilson, E.J.Adams, S.E.Blondelle, M.J.Boulanger, D.B.Wilson, K.C.Garcia
compound source
Molecule: T-Cell Receptor Alpha-Chain
Chain: A, E
Fragment: V2.3-J39-C
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pak400

Molecule: Mouse Tcrvbeta 172.10, Extracellular Variable Dom
Chain: B, F
Engineered: Yes
Mutation: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pak400

Molecule: H-2 Class II Histocompatibility Antigen, A-U Alph
Chain: C, G
Fragment: Extracellular Alpha-1, Extracellular Alpha-2
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: H2-Aa
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prmha3

Molecule: H-2 Class II Histocompatibility Antigen, A-U Beta
Chain: D, H
Fragment: Extracellular Beta-1, Extracellular Beta-2
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prmha3

Molecule: Myelin Basic Protein (Mbp)-Peptide
Chain: P, I
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 2 2 21
R_factor 0.232 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.835 327.162 127.161 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.42 Å
related structures by homologous chain: 1KB5, 1LNU, 1MWA, 1SJE, 1TCR, 2IAD
Gene
Ontology
ChainFunctionProcessComponent
C, G


F, B


H, D


Primary referenceStructure of an autoimmune T cell receptor complexed with class II peptide-MHC: insights into MHC bias and antigen specificity., Maynard J, Petersson K, Wilson DH, Adams EJ, Blondelle SE, Boulanger MJ, Wilson DB, Garcia KC, Immunity 2005 Jan;22(1):81-92. PMID:15664161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (1u3h.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (1u3h.pdb2.gz) 103 Kb
  • CSU: Contacts of Structural Units for 1U3H
  • Likely Quarternary Molecular Structure file(s) for 1U3H
  • Structure Factors (881 Kb)
  • Retrieve 1U3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U3H from S2C, [Save to disk]
  • Re-refined 1u3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U3H, from MSDmotif at EBI
  • Fold representative 1u3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u3h_C] [1u3h_A] [1u3h_E] [1u3h_I] [1u3h_B] [1u3h] [1u3h_G] [1u3h_P] [1u3h_F] [1u3h_D] [1u3h_H]
  • SWISS-PROT database: [P14438] [P06344] [Q5R1B3] [P04213]
  • Domain organization of [HA2U_MOUSE] [HB2U_MOUSE] [Q5R1B3_MOUSE] [TVB5_MOUSE] by SWISSPFAM
  • Domains found in 1U3H: [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART
  • Other resources with information on 1U3H
  • Community annotation for 1U3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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