1KB5 Complex (Immunoglobulin Receptor) date Apr 06, 1997
title Murine T-Cell Receptor Variable Domainfab Complex
authors D.Housset, G.Mazza, C.Gregoire, C.Piras, B.Malissen, J.C.Fontecil
compound source
Molecule: Kb5-C20 T-Cell Antigen Receptor
Chain: A
Fragment: Fv Fragment, Variable Domain
Synonym: Tcr Vaplha Vbeta Domain
Engineered: Yes
Other_details: 24 Residue Link Between Valpha C-Terminus An Terminus;
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: T-Cell
Cellular_location: Surface
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cellular_location: Myeloma

Molecule: Kb5-C20 T-Cell Antigen Receptor
Chain: B
Fragment: Fv Fragment, Variable Domain
Synonym: Tcr Vaplha Vbeta Domain
Engineered: Yes
Other_details: 24 Residue Link Between Valpha C-Terminus An Terminus;

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: T-Cell
Cellular_location: Surface
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cellular_location: Myeloma

Molecule: Antibody Desire-1
Chain: L
Fragment: Fab
Other_details: Cleaved By Papain

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Igg2a

Molecule: Antibody Desire-1
Chain: H
Fragment: Fab
Other_details: Cleaved By Papain

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Igg2a
symmetry Space Group: P 21 21 2
R_factor 0.219 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.310 80.950 52.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1B88, 1FGN, 1FO0, 1M7I, 1NAM, 1NMC, 1PG7, 1T4K, 1U3H
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceThe three-dimensional structure of a T-cell antigen receptor V alpha V beta heterodimer reveals a novel arrangement of the V beta domain., Housset D, Mazza G, Gregoire C, Piras C, Malissen B, Fontecilla-Camps JC, EMBO J 1997 Jul 16;16(14):4205-16. PMID:9250664
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1kb5.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 1KB5
  • Likely Quarternary Molecular Structure file(s) for 1KB5
  • Structure Factors (178 Kb)
  • Retrieve 1KB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KB5 from S2C, [Save to disk]
  • Re-refined 1kb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KB5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KB5, from MSDmotif at EBI
  • Genome occurence of 1KB5's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kb5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kb5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1kb5h1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1kb5h2, region H:114-213 [Jmol] [rasmolscript] [script source]
        - Domain d1kb5l1, region L:1-108 [Jmol] [rasmolscript] [script source]
        - Domain d1kb5l2, region L:109-214 [Jmol] [rasmolscript] [script source]
  • Fold representative 1kb5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kb5_B] [1kb5_A] [1kb5_L] [1kb5_H] [1kb5]
  • SWISS-PROT database: [P01865] [P01837] [P04214]
  • Domain organization of [GCAM_MOUSE] [IGKC_MOUSE] [TVB6_MOUSE] by SWISSPFAM
  • Domains found in 1KB5: [IG] [IG_like] [IGv ] by SMART
  • Other resources with information on 1KB5
  • Community annotation for 1KB5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1KB5 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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