1FO0 Immune System date Aug 24, 2000
title Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule Co
authors J.B.Reiser, C.Darnault, A.Guimezanes, C.Gregoire, T.Mosser, A.M. Verhulst, J.C.Fontecilla-Camps, B.Malissen, D.Housset, G.Mazza
compound source
Molecule: Protein (Allogeneic H-2kb Mhc Class I Molecule)
Chain: H
Fragment: Extracellular Domains (Alpha1, Alpha2, Alpha3)
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein (Beta-2 Microglobulin)
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Naturally Processed Octapeptide Pbm1
Chain: P
Engineered: Yes

Synthetic: Yes
Other_details: Sequence Naturally Occurs In Mus Muculus

Molecule: Protein (Bm3.3 T Cell Receptor Alpha-Chain)
Chain: A
Fragment: Fv Fragment, Variable Domain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell: Myeloma Cells

Molecule: Protein (Bm3.3 T Cell Receptor Beta-Chain)
Chain: B
Fragment: Fv Fragment, Variable Domain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell: Myeloma Cells
symmetry Space Group: P 21 21 2
R_factor 0.225 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.580 120.420 102.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
note 1FO0 is a representative structure
related structures by homologous chain: 1A9E, 1KB5, 1MI5, 1MRC, 1NAM
Gene
Ontology
ChainFunctionProcessComponent
B


L


Primary referenceCrystal structure of a T cell receptor bound to an allogeneic MHC molecule., Reiser JB, Darnault C, Guimezanes A, Gregoire C, Mosser T, Schmitt-Verhulst AM, Fontecilla-Camps JC, Malissen B, Housset D, Mazza G, Nat Immunol 2000 Oct;1(4):291-7. PMID:11017099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (1fo0.pdb1.gz) 107 Kb
  • CSU: Contacts of Structural Units for 1FO0
  • Likely Quarternary Molecular Structure file(s) for 1FO0
  • Structure Factors (600 Kb)
  • Retrieve 1FO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FO0 from S2C, [Save to disk]
  • Re-refined 1fo0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FO0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FO0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fo0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fo0b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fo0h2, region H:0-181 [Jmol] [rasmolscript] [script source]
        - Domain d1fo0h1, region H:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1fo0l_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1fo0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fo0_H] [1fo0_P] [1fo0_B] [1fo0_L] [1fo0_A] [1fo0]
  • SWISS-PROT database: [P01887] [P01901] [P04214]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [TVB6_MOUSE] by SWISSPFAM
  • Domains found in 1FO0: [IG] [IGc1 ] by SMART
  • Other resources with information on 1FO0
  • Community annotation for 1FO0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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