1MI5 Immune System date Aug 21, 2002
title The Crystal Structure Of Lc13 Tcr In Complex With Hlab8-Ebv Peptide Complex
authors L.Kjer-Nielsen, C.S.Clements, A.W.Purcell, A.G.Brooks, J.C.Whisstock, S.R.Burrows, J.Mccluskey, J.Rossjohn
compound source
Molecule: Mhc Heavy Chain
Chain: A
Fragment: Extracellular Domain
Synonym: Hla Class I Histocompatibility Antigen, B-8 B0801 Alpha Chain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta 2 Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Epstein Barr Virus Peptide
Chain: C
Fragment: Nonamer Peptide
Engineered: Yes

Synthetic: Yes
Other_details: Epstein Barr Virus Peptide Was Chemically Synthesized.;

Molecule: Tcr Alpha Chain
Chain: D
Fragment: Extracellular Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tcr Beta Chain
Chain: E
Fragment: Extracellular Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.490 105.900 144.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1BD2, 1FO0, 1J8H, 1S9X
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceA structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity., Kjer-Nielsen L, Clements CS, Purcell AW, Brooks AG, Whisstock JC, Burrows SR, McCluskey J, Rossjohn J, Immunity 2003 Jan;18(1):53-64. PMID:12530975
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1mi5.pdb1.gz) 140 Kb
  • CSU: Contacts of Structural Units for 1MI5
  • Likely Quarternary Molecular Structure file(s) for 1MI5
  • Retrieve 1MI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MI5 from S2C, [Save to disk]
  • View 1MI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MI5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mi5a2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1mi5a1, region A:182-277 [Jmol] [rasmolscript] [script source]
        - Domain d1mi5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1mi5d2, region D:118-206 [Jmol] [rasmolscript] [script source]
        - Domain d1mi5d1, region D:2-117 [Jmol] [rasmolscript] [script source]
        - Domain d1mi5e2, region E:119-247 [Jmol] [rasmolscript] [script source]
        - Domain d1mi5e1, region E:3-118 [Jmol] [rasmolscript] [script source]
  • Fold representative 1mi5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mi5_D] [1mi5_A] [1mi5] [1mi5_E] [1mi5_B] [1mi5_C]
  • SWISS-PROT database: [P30460] [P61769] [Q6NSA6] [P01848] [P01850]
  • Domain organization of [1B08_HUMAN] [B2MG_HUMAN] [Q6NSA6_HUMAN] [TCA_HUMAN] [TCB_HUMAN] by SWISSPFAM
  • Domains found in 1MI5: [IG] [IGc1] [IGv ] by SMART
  • Other resources with information on 1MI5
  • Community annotation for 1MI5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science