1T4K Immune System date Apr 29, 2004
title Crystal Structure Of Unliganded Aldolase Antibody 93f3 Fab
authors X.Zhu, I.A.Wilson
compound source
Molecule: Immunoglobulin Igg1, Kappa Light Chain
Chain: A, C
Fragment: Antibody Fab 93f3
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: 93f3 Murine Hybridoma

Molecule: Immunoglobulin Igg1, Heavy Chain
Chain: B, D
Fragment: Antibody Fab 93f3

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: 93f3 Murine Hybridoma
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.701 81.228 149.496 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ZN enzyme
related structures by homologous chain: 1CLY, 1JHK, 1KB5, 1MNU
Primary referenceThe Origin of Enantioselectivity in Aldolase Antibodies: Crystal Structure, Site-directed Mutagenesis, and Computational Analysis., Zhu X, Tanaka F, Hu Y, Heine A, Fuller R, Zhong G, Olson AJ, Lerner RA, Barbas CF 3rd, Wilson IA, J Mol Biol 2004 Nov 5;343(5):1269-80. PMID:15491612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1t4k.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1t4k.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (1t4k.pdb3.gz) 138 Kb
  • Biological Unit Coordinates (1t4k.pdb4.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 1T4K
  • CSU: Contacts of Structural Units for 1T4K
  • Likely Quarternary Molecular Structure file(s) for 1T4K
  • Structure Factors (244 Kb)
  • Retrieve 1T4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T4K from S2C, [Save to disk]
  • Re-refined 1t4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T4K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T4K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t4ka1, region A:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1t4ka2, region A:108-212 [Jmol] [rasmolscript] [script source]
        - Domain d1t4kb1, region B:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1t4kb2, region B:114-228 [Jmol] [rasmolscript] [script source]
        - Domain d1t4kc1, region C:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1t4kc2, region C:108-212 [Jmol] [rasmolscript] [script source]
        - Domain d1t4kd1, region D:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1t4kd2, region D:114-228 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t4k_B] [1t4k] [1t4k_C] [1t4k_A] [1t4k_D]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 1T4K: [IG_like] [IGv ] by SMART
  • Other resources with information on 1T4K
  • Community annotation for 1T4K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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