1JHK Immune System date Jun 28, 2001
title Crystal Structure Of The Anti-Estradiol Antibody 57-2
authors U.Lamminmaki, J.A.Kankare
compound source
Molecule: Ig Kappa-Chain
Chain: L
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl-1 Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcomb3

Molecule: Ig Gamma-1-Chain
Chain: H
Fragment: Residues 1-215
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl-1 Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcomb3
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.267 64.456 165.702 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.51 Å
related structures by homologous chain: 1N8Z, 1T4K, 1V7M
Primary referenceCrystal structure of a recombinant anti-estradiol Fab fragment in complex with 17beta -estradiol., Lamminmaki U, Kankare JA, J Biol Chem 2001 Sep 28;276(39):36687-94. PMID:11451948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1jhk.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 1JHK
  • Likely Quarternary Molecular Structure file(s) for 1JHK
  • Structure Factors (142 Kb)
  • Retrieve 1JHK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JHK from S2C, [Save to disk]
  • Re-refined 1jhk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JHK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JHK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JHK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jhkh2, region H:114-213 [Jmol] [rasmolscript] [script source]
        - Domain d1jhkh1, region H:2-113 [Jmol] [rasmolscript] [script source]
        - Domain d1jhkl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1jhkl2, region L:108-213 [Jmol] [rasmolscript] [script source]
  • Fold representative 1jhk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jhk] [1jhk_H] [1jhk_L]
  • SWISS-PROT database: [Q99LC4]
  • Domain organization of [Q99LC4_MOUSE] by SWISSPFAM
  • Domains found in 1JHK: [IG_like] [IGv ] by SMART
  • Other resources with information on 1JHK
  • Community annotation for 1JHK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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