1FGN	Immunoglobulin	date	Apr 10, 1997
title	Monoclonal Murine Antibody 5g9-Anti-Human Tissue Factor
authors	M.Huang, R.Syed, E.A.Stura, M.J.Stone, R.S.Stefanko, W.Ruf, T.S.Ed I.A.Wilson
compound		source
Molecule: Immunoglobulin Fab 5g9 Chain: L Fragment: Light Chain Residues 1 - 214, Heavy Chain Residue Synonym: Fab, Fab Light Chain, Fab Heavy Chain Other_details: A Monoclonal Fab Against Human Tissue Factor		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Organ: Blood Tissue: Blood
Molecule: Immunoglobulin Fab 5g9 Chain: H Fragment: Light Chain Residues 1 - 214, Heavy Chain Residue Synonym: Fab, Fab Light Chain, Fab Heavy Chain Other_details: A Monoclonal Fab Against Human Tissue Factor		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Organ: Blood Tissue: Blood
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.304
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.600 93.700 60.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1KB5, 1NCC, 1PG7
Gene Ontology	Chain Function Process Component L
Primary reference	The mechanism of an inhibitory antibody on TF-initiated blood coagulation revealed by the crystal structures of human tissue factor, Fab 5G9 and TF.G9 complex., Huang M, Syed R, Stura EA, Stone MJ, Stefanko RS, Ruf W, Edgington TS, Wilson IA, J Mol Biol 1998 Feb 6;275(5):873-94. PMID:9480775

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (1fgn.pdb1.gz) 64 Kb CSU: Contacts of Structural Units for 1FGN Likely Quarternary Molecular Structure file(s) for 1FGN Retrieve 1FGN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FGN from S2C, [Save to disk]

View 1FGN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FGN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FGN, from MSDmotif at EBI Genome occurence of 1FGN's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fgnh1, region H:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1fgnh2, region H:118-214 [Jmol] [rasmolscript] [script source]     - Domain d1fgnl1, region L:1-108 [Jmol] [rasmolscript] [script source]     - Domain d1fgnl2, region L:109-214 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fgn_H] [1fgn_L] [1fgn] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1FGN: [IG_like] [IGv ] by SMART

Other resources with information on 1FGN

Community annotation for 1FGN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1FGN from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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