1BKC Zn-Endopeptidase date Apr 23, 1998
title Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
authors K.Maskos, C.Fernandez-Catalan, W.Bode
compound source
Molecule: Tumor Necrosis Factor-Alpha-Converting Enzyme
Chain: A, C
Synonym: Tace
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tumor Necrosis Factor-Alpha-Converting Enzyme
Chain: E
Synonym: Tace
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tumor Necrosis Factor-Alpha-Converting Enzyme
Chain: I
Synonym: Tace
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.380 126.270 81.270 90.00 107.41 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand INN, ZN enzyme
related structures by homologous chain: 1BSW, 1WNI
Gene
Ontology
ChainFunctionProcessComponent
A, C, I, E


Primary referenceCrystal structure of the catalytic domain of human tumor necrosis factor-alpha-converting enzyme., Maskos K, Fernandez-Catalan C, Huber R, Bourenkov GP, Bartunik H, Ellestad GA, Reddy P, Wolfson MF, Rauch CT, Castner BJ, Davis R, Clarke HR, Petersen M, Fitzner JN, Cerretti DP, March CJ, Paxton RJ, Black RA, Bode W, Proc Natl Acad Sci U S A 1998 Mar 31;95(7):3408-12. PMID:9520379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (1bkc.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (1bkc.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (1bkc.pdb3.gz) 53 Kb
  • Biological Unit Coordinates (1bkc.pdb4.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1BKC
  • CSU: Contacts of Structural Units for 1BKC
  • Likely Quarternary Molecular Structure file(s) for 1BKC
  • Retrieve 1BKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BKC from S2C, [Save to disk]
  • View 1BKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BKC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BKC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bkca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bkcc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bkce_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1bkci_, region I [Jmol] [rasmolscript] [script source]
  • Fold representative 1bkc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bkc_A] [1bkc_C] [1bkc] [1bkc_E] [1bkc_I]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 1BKC
  • Community annotation for 1BKC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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