1BLR Transport date Jul 20, 1998
title Nmr Solution Structure Of Human Cellular Retinoic Acid Binding Protein-Type II, 22 Structures
authors L.Wang, Y.Li, F.Abilddard, H.Yan, J.Markely
compound source
Molecule: Cellular Retinoic Acid Binding Protein-Type II
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21 (De3)Plyss
Gene: Crabp-II
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_cell_line: Bl21 (De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17bplyss
methodSolution NMR
related structures by homologous chain: 1BM5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR solution structure of type II human cellular retinoic acid binding protein: implications for ligand binding., Wang L, Li Y, Abildgaard F, Markley JL, Yan H, Biochemistry 1998 Sep 15;37(37):12727-36. PMID:9737849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (817 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1BLR
  • Original NMR restraints for 1BLR from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BLR from S2C, [Save to disk]
  • View 1BLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BLR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BLR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1blr__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1blr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1blr_A] [1blr]
  • SWISS-PROT database: [P29373]
  • Domain organization of [RABP2_HUMAN] by SWISSPFAM
  • Other resources with information on 1BLR
  • Community annotation for 1BLR at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BLR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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