1BMB	Hormone Growth Factor	date	Jul 23, 1998
title	Grb2-Sh2 Domain In Complex With Kpfyvnvef (Pkf270-974)
authors	J.M.Rondeau, M.Zurini
compound		source
Molecule: Protein (Growth Factor Receptor Bound Protein 2) Chain: A Fragment: Sh2 Domain Synonym: Grb2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Cytoplasm Gene: Grb2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_variant: Plyss Expression_system_cellular_location: Cytoplasm
Molecule: Protein (Pkf270-974) Chain: I Fragment: 174-182 Of Bcr-Abl Engineered: Yes Other_details: Ptr: Phosphotyrosine		Synthetic: Yes Other_details: The Protein Was Chemically Synthesized
symmetry	Space Group: P 41 21 2	R_factor 0.187 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.130 51.130 90.250 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	PTR BindingDB	enzyme
related structures	by homologous chain: 1JYQ, 1ZFP
Primary reference	Structural and conformational requirements for high-affinity binding to the SH2 domain of Grb2(1)., Ettmayer P, France D, Gounarides J, Jarosinski M, Martin MS, Rondeau JM, Sabio M, Topiol S, Weidmann B, Zurini M, Bair KW, J Med Chem 1999 Mar 25;42(6):971-80. PMID:10090780

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (1bmb.pdb1.gz) 21 Kb Biological Unit Coordinates (1bmb.pdb2.gz) 41 Kb LPC: Ligand-Protein Contacts for 1BMB CSU: Contacts of Structural Units for 1BMB Likely Quarternary Molecular Structure file(s) for 1BMB Structure Factors (83 Kb) Retrieve 1BMB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BMB from S2C, [Save to disk] Re-refined 1bmb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BMB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BMB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BMB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bmba_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bmb_A] [1bmb] [1bmb_I] SWISS-PROT database: [P62993] Domain organization of [GRB2_HUMAN] by SWISSPFAM Domain found in 1BMB: [SH2 ] by SMART

Other resources with information on 1BMB

Community annotation for 1BMB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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