1ZFP	Complex (Signal Transduction Peptide)	date	Mar 26, 1998
title	Growth Factor Receptor Binding Protein Sh2 Domain Complexed Phosphotyrosyl Pentapeptide
authors	J.Rahuel
compound		source
Molecule: Growth Factor Receptor Binding Protein Chain: E Fragment: Sh2 Synonym: Grb2-Sh2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: The Protein Was Expressed As A Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_gene: The Protein Was Expressed As A Fusi Protein With Glutathione-S-Transferase (Gst) And Cleaved Us Factor X;
Molecule: Epidermal Growth Factor Receptor-Derived Peptide Chain: I Fragment: 1067-1071 Synonym: 2-Abz-Glu-Tyr(Po3h2)-Ile-Asn-Gln-Nh2, With 2-Abz B Amino-Benzoyl; Engineered: Yes
symmetry	Space Group: C 2 2 21	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.900 113.700 46.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	BE2, NH2, PTR, ZN BindingDB	enzyme
related structures	by homologous chain: 1BMB, 1JYR
Primary reference	Structural basis for the high affinity of amino-aromatic SH2 phosphopeptide ligands., Rahuel J, Garcia-Echeverria C, Furet P, Strauss A, Caravatti G, Fretz H, Schoepfer J, Gay B, J Mol Biol 1998 Jun 19;279(4):1013-22. PMID:9642078

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (1zfp.pdb1.gz) 20 Kb Biological Unit Coordinates (1zfp.pdb2.gz) 39 Kb Biological Unit Coordinates (1zfp.pdb3.gz) 39 Kb Biological Unit Coordinates (1zfp.pdb4.gz) 39 Kb Biological Unit Coordinates (1zfp.pdb5.gz) 39 Kb LPC: Ligand-Protein Contacts for 1ZFP CSU: Contacts of Structural Units for 1ZFP Likely Quarternary Molecular Structure file(s) for 1ZFP Retrieve 1ZFP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZFP from S2C, [Save to disk]

View 1ZFP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZFP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZFP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1zfpe_, region E [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zfp_I] [1zfp_E] [1zfp] SWISS-PROT database: [P62993] Domain organization of [GRB2_HUMAN] by SWISSPFAM Domain found in 1ZFP: [SH2 ] by SMART

Other resources with information on 1ZFP

Community annotation for 1ZFP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1ZFP from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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