1BOI	Transferase	date	Aug 04, 1998
title	N-Terminally Truncated Rhodanese
authors	F.Gliubich, R.Berni, M.Cianci, R.J.Trevino, P.M.Horowitz, G.Zanotti
compound		source
Molecule: Rhodanese Chain: A Fragment: Del(1-7) Ec: 2.8.1.1 Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Cell_line: 293 Organ: Liver Cellular_location: Cytoplasm Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_cellular_location: Cytoplasm Expression_system_vector: Plasmid Expression_system_plasmid: Pttq19
symmetry	Space Group: P 21 21 2	R_factor 0.162 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.690 73.250 39.670 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CSS	enzyme	Transferase E.C.2.8.1.1 BRENDA
related structures	by homologous chain: 1BOH, 1DP2
Gene Ontology	Chain Function Process Component A
Primary reference	NH2-terminal sequence truncation decreases the stability of bovine rhodanese, minimally perturbs its crystal structure, and enhances interaction with GroEL under native conditions., Trevino RJ, Gliubich F, Berni R, Cianci M, Chirgwin JM, Zanotti G, Horowitz PM, J Biol Chem. 1999 May 14;274(20):13938-47. PMID:10318804

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1boi.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1BOI CSU: Contacts of Structural Units for 1BOI Likely Quarternary Molecular Structure file(s) for 1BOI Structure Factors (124 Kb) Retrieve 1BOI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BOI from S2C, [Save to disk] Re-refined 1boi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BOI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BOI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BOI, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1boi_2, region 150-293 [Jmol] [rasmolscript] [script source]     - Domain d1boi_1, region 8-149 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1boi] [1boi_A] SWISS-PROT database: [P00586] Domain organization of [THTR_BOVIN] by SWISSPFAM Domain found in 1BOI: [RHOD ] by SMART

Other resources with information on 1BOI

Community annotation for 1BOI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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