1BPB	Nucleotidyltransferase	date	Apr 12, 1994
title	Crystal Structure Of Rat Dna Polymerase Beta: Evidence For A Polymerase Mechanism
authors	M.R.Sawaya, H.Pelletier, A.Kumar, S.H.Wilson, J.Kraut
compound		source
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system_vector_type: Bacterial
symmetry	Space Group: P 21 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.576 63.520 38.215 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand		enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 1BPY, 1ZQW
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism., Sawaya MR, Pelletier H, Kumar A, Wilson SH, Kraut J, Science 1994 Jun 24;264(5167):1930-5. PMID:7516581

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (1bpb.pdb1.gz) 42 Kb CSU: Contacts of Structural Units for 1BPB Likely Quarternary Molecular Structure file(s) for 1BPB Retrieve 1BPB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BPB from S2C, [Save to disk]

View 1BPB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BPB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BPB, from MSDmotif at EBI Genome occurence of 1BPB's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bpb_2, region 149-335 [Jmol] [rasmolscript] [script source]     - Domain d1bpb_1, region 91-148 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bpb] [1bpb_A] SWISS-PROT database: [P06766] Domain organization of [DPOLB_RAT] by SWISSPFAM Domains found in 1BPB: [HhH1] [POLXc ] by SMART

Other resources with information on 1BPB

Community annotation for 1BPB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---