1BQL	Antibody Antigen	date	Feb 03, 1995
title	Structure Of An Anti-Hel Fab Fragment Complexed With Bobwhit Lysozyme
authors	S.Chacko, D.R.Davies
compound		source
Molecule: Hyhel-5 Fab (Light Chain) Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Hyhel-5 Fab (Heavy Chain) Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Bobwhite Quail Lysozyme Chain: Y Engineered: Yes		Organism_scientific: Colinus Virginianus Organism_common: Northern Bobwhite Organism_taxid: 9014
symmetry	Space Group: P 1 21 1	R_factor 0.191 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.800 74.800 79.000 90.00 101.80 90.00
method	X-Ray Diffraction	resolution	2.60 Å
related structures	by homologous chain: 1BFO, 1MEL, 1MIM, 1MPA, 1RJL, 2IFF
Gene Ontology	Chain Function Process Component Y
Primary reference	Refined structures of bobwhite quail lysozyme uncomplexed and complexed with the HyHEL-5 Fab fragment., Chacko S, Silverton EW, Smith-Gill SJ, Davies DR, Shick KA, Xavier KA, Willson RC, Jeffrey PD, Chang CY, Sieker LC, Sheriff S, Proteins. 1996 Sep;26(1):55-65. PMID:8880929

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (1bql.pdb1.gz) 89 Kb CSU: Contacts of Structural Units for 1BQL Likely Quarternary Molecular Structure file(s) for 1BQL Structure Factors (180 Kb) Retrieve 1BQL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BQL from S2C, [Save to disk] Re-refined 1bql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BQL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BQL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BQL, from MSDmotif at EBI Genome occurence of 1BQL's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bqlh2, region H:117-215 [Jmol] [rasmolscript] [script source]     - Domain d1bqlh1, region H:2-116 [Jmol] [rasmolscript] [script source]     - Domain d1bqll1, region L:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1bqll2, region L:107-212 [Jmol] [rasmolscript] [script source]     - Domain d1bqly_, region Y [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bql_H] [1bql_L] [1bql] [1bql_Y] SWISS-PROT database: [P00700] Domain organization of [LYSC_COLVI] by SWISSPFAM Domains found in 1BQL: [IG_like] [IGv] [LYZ1 ] by SMART

Other resources with information on 1BQL

Community annotation for 1BQL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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