1MIM Immunoglobulin date Dec 04, 1995
title Igg Fab Fragment (Cd25-Binding)
authors V.Mikol
compound source
Molecule: Chimeric Sdz Chi621
Chain: L
Fragment: Igg Fab
Engineered: Yes
Other_details: Murine Anti-Cd25 Monoclonal Antibody, Rft5, Chimerized With The Constant Regions Of Human 1gg1 Heavy And Kappa Light Chains;
Fragment: Constant Regions Of 1gg1 Heavy And Kappa Light Chains;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Chimeric Sdz Chi621
Chain: H
Fragment: Igg Fab
Engineered: Yes
Other_details: Murine Anti-Cd25 Monoclonal Antibody, Rft5, Chimerized With The Constant Regions Of Human 1gg1 Heavy And Kappa Light Chains

Fragment: Constant Regions Of 1gg1 Heavy And Kappa Light Chains;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.580 59.760 102.090 90.00 99.98 90.00
method X-Ray Diffractionresolution 2.60 Å
related structures by homologous chain: 1AXS, 1BQL, 1LMK, 1MPA
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceStructure of the fab fragment of SDZ CHI621: a chimeric antibody against CD25., Mikol V, Acta Crystallogr D Biol Crystallogr. 1996 May 1;52(Pt 3):534-42. PMID:15299676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1mim.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 1MIM
  • Likely Quarternary Molecular Structure file(s) for 1MIM
  • Structure Factors (109 Kb)
  • Retrieve 1MIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MIM from S2C, [Save to disk]
  • Re-refined 1mim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MIM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MIM, from MSDmotif at EBI
  • Genome occurence of 1MIM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mimh1, region H:1-115 [Jmol] [rasmolscript] [script source]
        - Domain d1mimh2, region H:116-215 [Jmol] [rasmolscript] [script source]
        - Domain d1miml1, region L:1-105 [Jmol] [rasmolscript] [script source]
        - Domain d1miml2, region L:106-210 [Jmol] [rasmolscript] [script source]
  • Fold representative 1mim from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mim_H] [1mim_L] [1mim]
  • SWISS-PROT database: [P01834]
  • Domain organization of [IGKC_HUMAN] by SWISSPFAM
  • Domains found in 1MIM: [IG_like] [IGv ] by SMART
  • Other resources with information on 1MIM
  • Community annotation for 1MIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1MIM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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