1C15 Apoptosis date Jul 20, 1999
title Solution Structure Of Apaf-1 Card
authors P.Zhou, J.Chou, R.S.Olea, J.Yuan, G.Wagner
compound source
Molecule: Apoptotic Protease Activating Factor 1
Chain: A
Fragment: Caspase Recruitment Domain
Synonym: Apaf-1 Card
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
related structures by homologous chain: 1CWW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of Apaf-1 CARD and its interaction with caspase-9 CARD: a structural basis for specific adaptor/caspase interaction., Zhou P, Chou J, Olea RS, Yuan J, Wagner G, Proc Natl Acad Sci U S A 1999 Sep 28;96(20):11265-70. PMID:10500165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (421 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1C15
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1C15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C15 from S2C, [Save to disk]
  • View 1C15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C15
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C15, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c15a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1c15 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c15_A] [1c15]
  • SWISS-PROT database: [O14727]
  • Domain organization of [APAF_HUMAN] by SWISSPFAM
  • Other resources with information on 1C15
  • Community annotation for 1C15 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1C15 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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