1CWW SOLUTION STRUCTURE OF THE CASPASE RECRUITMENT DOMAIN (CARD) FROM APAF-1 date
authors Day, C.L., Dupont, C., Lackmann, M., Vaux, D.L., Hinds, M.G.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
related structures by homologous chain: 1C15, 3YGS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and mutagenesis of the caspase recruitment domain (CARD) from Apaf-1., Day CL, Dupont C, Lackmann M, Vaux DL, Hinds MG, Cell Death Differ 1999 Nov;6(11):1125-32. PMID:10578182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (524 Kb) [Save to disk]
  • Biological Unit Coordinates (1cww.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1CWW
  • Retrieve 1CWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CWW from S2C, [Save to disk]
    • View 1CWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CWW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CWW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cwwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cww] [1cww_A]
  • SWISS-PROT database: [O14727]
  • Domain organization of [APAF_HUMAN] by SWISSPFAM
    • Other resources with information on 1CWW
  • Community annotation for 1CWW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1CWW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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