1CWW Apoptosis date Aug 26, 1999
title Solution Structure Of The Caspase Recruitment Domain (Card) From Apaf-1
authors C.L.Day, C.Dupont, M.Lackmann, D.L.Vaux, M.G.Hinds
compound source
Molecule: Apoptotic Protease Activating Factor 1
Chain: A
Fragment: Caspase Recruitment Domain
Synonym: Card Of Apaf-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 6p-3
methodSolution NMR
related structures by homologous chain: 1C15, 3YGS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and mutagenesis of the caspase recruitment domain (CARD) from Apaf-1., Day CL, Dupont C, Lackmann M, Vaux DL, Hinds MG, Cell Death Differ 1999 Nov;6(11):1125-32. PMID:10578182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1CWW
  • Retrieve 1CWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CWW from S2C, [Save to disk]
  • View 1CWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CWW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CWW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cwwa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cww from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cww] [1cww_A]
  • SWISS-PROT database: [O14727]
  • Domain organization of [APAF_HUMAN] by SWISSPFAM
  • Other resources with information on 1CWW
  • Community annotation for 1CWW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CWW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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