1C5G Blood Clotting date Dec 07, 1999
title Plasminogen Activator Inhibitor-1
authors E.J.Goldsmith
compound source
Molecule: Plasminogen Activator Inhibitor-1
Chain: A
Synonym: Pai-1
Engineered: Yes
Other_details: Latent Form
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppaist-7hs
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.590 47.840 62.880 90.00 107.78 90.00
method X-Ray Diffractionresolution 2.60 Å
related structures by homologous chain: 1DVM, 9PAI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering of plasminogen activator inhibitor-1 to reduce the rate of latency transition., Tucker HM, Mottonen J, Goldsmith EJ, Gerard RD, Nat Struct Biol 1995 Jun;2(6):442-5. PMID:7664104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1c5g.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 1C5G
  • Likely Quarternary Molecular Structure file(s) for 1C5G
  • Retrieve 1C5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C5G from S2C, [Save to disk]
  • View 1C5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C5G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1C5G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c5ga_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1c5g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c5g_A] [1c5g]
  • SWISS-PROT database: [P05121]
  • Domain organization of [PAI1_HUMAN] by SWISSPFAM
  • Domain found in 1C5G: [SERPIN ] by SMART
  • Alignments of the sequence of 1C5G with the sequences similar proteins can be viewed for 1C5G's classification [PAI1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PAI1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1C5G
  • Community annotation for 1C5G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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