1C8P Membrane Protein date Oct 05, 1999
title Nmr Structure Of The Ligand Binding Domain Of The Common Bet The Gm-Csf, Il-3 And Il-5 Receptors
authors T.D.Mulhern, R.J.D'Andrea, C.Gaunt, L.Vandeleur, M.A.Vadas, A.F.L G.W.Booker, C.J.Bagley
compound source
Molecule: Cytokine Receptor Common Beta Chain
Chain: A
Fragment: Domain 4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Hemopoietic Cells
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pec611
methodSolution NMR
note 1C8P supersedes 1D4Q
related structures by homologous chain: 1GH7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the cytokine-binding domain of the common beta-chain of the receptors for granulocyte-macrophage colony-stimulating factor, interleukin-3 and interleukin-5., Mulhern TD, Lopez AF, D'Andrea RJ, Gaunt C, Vandeleur L, Vadas MA, Booker GW, Bagley CJ, J Mol Biol 2000 Apr 7;297(4):989-1001. PMID:10736232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (544 Kb) [Save to disk]
  • Biological Unit Coordinates (1c8p.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1C8P
  • Original NMR restraints for 1C8P from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1C8P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C8P from S2C, [Save to disk]
    • View 1C8P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C8P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C8P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c8pa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c8p_A] [1c8p]
  • SWISS-PROT database: [P32927]
  • Domain organization of [IL3RB_HUMAN] by SWISSPFAM
  • Domain found in 1C8P: [FN3 ] by SMART
    • Other resources with information on 1C8P
  • Community annotation for 1C8P at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1C8P from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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