1GH7 Cytokine Receptor date Nov 27, 2000
title Crystal Structure Of The Complete Extracellular Domain Of Th Common Receptor Of Il-3, Il-5, And Gm-Csf
authors P.D.Carr, S.E.Gustin, A.P.Church, J.M.Murphy, S.C.Ford, D.A.Mann, D.M.Woltring, I.Walker, D.L.Ollis, I.G.Young
compound source
Molecule: Cytokine Receptor Common Beta Chain
Chain: A, B
Fragment: Extracellular Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Cell Line Hl60 Derived From A Promyelocytic Leuk
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Bti-Tn-5bi-4 (High Five) Invit
Expression_system_vector: Autographa Californica Nuclear Polyhedrosis Virus (Baculovirus);
Expression_system_plasmid: Pbacpak8 (Clontech)
symmetry Space Group: H 3
R_factor 0.267 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.700 185.700 103.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand BMA, FUC, NAG enzyme
related structures by homologous chain: 1C8P, 1EGJ
Primary referenceStructure of the complete extracellular domain of the common beta subunit of the human GM-CSF, IL-3, and IL-5 receptors reveals a novel dimer configuration., Carr PD, Gustin SE, Church AP, Murphy JM, Ford SC, Mann DA, Woltring DM, Walker I, Ollis DL, Young IG, Cell 2001 Jan 26;104(2):291-300. PMID:11207369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (1gh7.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 1GH7
  • CSU: Contacts of Structural Units for 1GH7
  • Likely Quarternary Molecular Structure file(s) for 1GH7
  • Structure Factors (155 Kb)
  • Retrieve 1GH7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GH7 from S2C, [Save to disk]
  • Re-refined 1gh7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GH7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GH7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GH7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gh7a1, region A:1-103 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7a2, region A:104-217 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7a3, region A:218-316 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7a4, region A:317-416 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7b1, region B:1-103 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7b2, region B:104-217 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7b3, region B:218-316 [Jmol] [rasmolscript] [script source]
        - Domain d1gh7b4, region B:317-416 [Jmol] [rasmolscript] [script source]
  • Fold representative 1gh7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gh7] [1gh7_A] [1gh7_B]
  • SWISS-PROT database: [P32927]
  • Domain organization of [IL3RB_HUMAN] by SWISSPFAM
  • Domain found in 1GH7: [FN3 ] by SMART
  • Other resources with information on 1GH7
  • Community annotation for 1GH7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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