1EGJ Immune System date Feb 15, 2000
title Domain 4 Of The Beta Common Chain In Complex With An Antibod
authors J.Rossjohn, W.J.Mckinstry, J.M.Woodcock, B.J.Mcclure, T.R.Hercus M.W.Parker, A.F.Lopez, C.J.Bagley
compound source
Molecule: Cytokine Receptor Common Beta Chain Precursor
Chain: A
Fragment: Domain 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pcdna3 (Invitrogen)

Molecule: Antibody (Light Chain)
Chain: L

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Monoclonal Antibody

Molecule: Antibody (Heavy Chain)
Chain: H

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Monoclonal Antibody
symmetry Space Group: P 41 21 2
R_factor 0.228 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.610 77.610 296.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG enzyme
related structures by homologous chain: 1D5B, 1F4Y, 1GH7, 1KFA, 1M71
Gene
Ontology
ChainFunctionProcessComponent
A


L


Primary referenceStructure of the activation domain of the GM-CSF/IL-3/IL-5 receptor common beta-chain bound to an antagonist., Rossjohn J, McKinstry WJ, Woodcock JM, McClure BJ, Hercus TR, Parker MW, Lopez AF, Bagley CJ, Blood 2000 Apr 15;95(8):2491-8. PMID:10753826
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1egj.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 1EGJ
  • CSU: Contacts of Structural Units for 1EGJ
  • Likely Quarternary Molecular Structure file(s) for 1EGJ
  • Retrieve 1EGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EGJ from S2C, [Save to disk]
  • View 1EGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EGJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EGJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1egja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1egjh1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1egjh2, region H:114-225 [Jmol] [rasmolscript] [script source]
        - Domain d1egjl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1egjl2, region L:108-211 [Jmol] [rasmolscript] [script source]
  • Fold representative 1egj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1egj_H] [1egj_A] [1egj_L] [1egj]
  • SWISS-PROT database: [P01865] [P32927] [P01661] [Q6PJA7]
  • Domain organization of [GCAM_MOUSE] [IL3RB_HUMAN] [KV3A9_MOUSE] [Q6PJA7_MOUSE] by SWISSPFAM
  • Domains found in 1EGJ: [FN3] [IGc1] [IGv ] by SMART
  • Other resources with information on 1EGJ
  • Community annotation for 1EGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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