1CB6 Iron Transport date Mar 01, 1999
title Structure Of Human Apolactoferrin At 2.0 A Resolution.
authors G.B.Jameson, B.F.Anderson, G.E.Norris, D.H.Thomas, E.N.Baker
compound source
Molecule: Lactotransferrin
Chain: A
Fragment: Unp Residues 20-710
Synonym: Lactoferrin,Growth-Inhibiting Protein 12,Talalacto
Ec: 3.4.21.-
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Breast
Secretion: Milk
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.090 94.580 55.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL enzyme Hydrolase E.C.3.4.21 BRENDA
related structures by homologous chain: 1EH3, 1H44, 1SDX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human apolactoferrin at 2.0 A resolution. Refinement and analysis of ligand-induced conformational change., Jameson GB, Anderson BF, Norris GE, Thomas DH, Baker EN, Acta Crystallogr D Biol Crystallogr 1998 Nov 1;54(Pt 6 Pt 2):1319-35. PMID:10089508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1cb6.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1CB6
  • CSU: Contacts of Structural Units for 1CB6
  • Likely Quarternary Molecular Structure file(s) for 1CB6
  • Structure Factors (388 Kb)
  • Retrieve 1CB6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CB6 from S2C, [Save to disk]
  • Re-refined 1cb6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1CB6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CB6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CB6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cb6a1, region A:1001-1334 [Jmol] [rasmolscript] [script source]
        - Domain d1cb6a2, region A:1335-1691 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cb6_A] [1cb6]
  • SWISS-PROT database: [P02788]
  • Domain organization of [TRFL_HUMAN] by SWISSPFAM
  • Domain found in 1CB6: [TR_FER ] by SMART
  • Other resources with information on 1CB6
  • Community annotation for 1CB6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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