1CDW Transcription Dna date Apr 11, 1996
title Human Tbp Core Domain Complexed With Dna
authors D.B.Nikolov, H.Chen, E.D.Halay, A.Hoffmann, R.G.Roeder, S.K.Burle
compound source
Molecule: Dna (5'-D(Cptpgpcptpaptpapapapapgpgp 3');
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Cpapgpcpcptptptptpaptpapgp 3');
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Protein (Tata Binding Protein (Tbp))
Chain: A
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.189 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
45.800 78.000 97.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
note 1CDW (Molecule of the Month:pdb67)
related structures by homologous chain: 1NH2, 1QNE

Primary referenceCrystal structure of a human TATA box-binding protein/TATA element complex., Nikolov DB, Chen H, Halay ED, Hoffman A, Roeder RG, Burley SK, Proc Natl Acad Sci U S A 1996 May 14;93(10):4862-7. PMID:8643494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1cdw.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1CDW
  • Likely Quarternary Molecular Structure file(s) for 1CDW
  • Retrieve 1CDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CDW from S2C, [Save to disk]
  • View 1CDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CDW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CDW, from MSDmotif at EBI
  • Genome occurence of 1CDW's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cdwa1, region A:155-252 [Jmol] [rasmolscript] [script source]
        - Domain d1cdwa2, region A:253-333 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cdw_B] [1cdw_C] [1cdw_A] [1cdw]
  • SWISS-PROT database: [P20226]
  • Domain organization of [TBP_HUMAN] by SWISSPFAM
  • Other resources with information on 1CDW
  • Community annotation for 1CDW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CDW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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