1QNE	Tata Box-Binding Protein (Tbp)	date	Oct 14, 1999
title	Crystal Structure Of The Adenovirus Major Late Promoter Tata To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform 2).
authors	J.L.Kim, S.K.Burley
compound		source
Molecule: Transcription Initiation Factor Tfiid-1 Chain: A, B Synonym: Tata-Box Factor 1, Tata Sequence-Binding Protein 1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Gpcptpaptpapapapapgpgpgpcp Chain: C, E Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Tpgpcpcpcptptptptpaptpapgp Chain: D, F Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.000 147.000 57.000 90.00 90.50 90.00
method	X-Ray Diffraction	resolution	1.90 Å
related structures	by homologous chain: 1CDW, 1QN4, 1QN9
Gene Ontology	Chain Function Process Component A, B obsolete general RNA polymer...
Primary reference	TATA element recognition by the TATA box-binding protein has been conserved throughout evolution., Patikoglou GA, Kim JL, Sun L, Yang SH, Kodadek T, Burley SK, Genes Dev 1999 Dec 15;13(24):3217-30. PMID:10617571

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (1qne.pdb1.gz) 46 Kb Biological Unit Coordinates (1qne.pdb2.gz) 47 Kb CSU: Contacts of Structural Units for 1QNE Likely Quarternary Molecular Structure file(s) for 1QNE Retrieve 1QNE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QNE from S2C, [Save to disk]

View 1QNE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QNE

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1QNE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qnea2, region A:116-198 [Jmol] [rasmolscript] [script source]     - Domain d1qnea1, region A:12-115 [Jmol] [rasmolscript] [script source]     - Domain d1qneb1, region B:11-115 [Jmol] [rasmolscript] [script source]     - Domain d1qneb2, region B:116-198 [Jmol] [rasmolscript] [script source] Fold representative 1qne from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qne_F] [1qne] [1qne_B] [1qne_C] [1qne_D] [1qne_E] [1qne_A] SWISS-PROT database: [P28147] Domain organization of [TBP1_ARATH] by SWISSPFAM

Other resources with information on 1QNE

Community annotation for 1QNE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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