1CEB Serine Protease date Dec 03, 1995
title The Structure Of The Non-Covalent Complex Of Recombinant Kri Domain Of Human Plasminogen With Amcha (Trans-4- Aminomethylcyclohexane-1-Carboxylic Acid)
authors A.Tulinsky, I.I.Mathews
compound source
Molecule: Plasminogen
Chain: A, B
Fragment: Kringle 1
Synonym: K1pg
Ec: 3.4.21.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.300 51.700 46.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand AMH BindingDB enzyme Hydrolase E.C.3.4.21.7 BRENDA
related structures by homologous chain: 1CEA, 1PKR
Primary referenceCrystal structures of the recombinant kringle 1 domain of human plasminogen in complexes with the ligands epsilon-aminocaproic acid and trans-4-(aminomethyl)cyclohexane-1-carboxylic Acid., Mathews II, Vanderhoff-Hanaver P, Castellino FJ, Tulinsky A, Biochemistry 1996 Feb 27;35(8):2567-76. PMID:8611560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1ceb.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (1ceb.pdb2.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1CEB
  • CSU: Contacts of Structural Units for 1CEB
  • Likely Quarternary Molecular Structure file(s) for 1CEB
  • Retrieve 1CEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CEB from S2C, [Save to disk]
  • View 1CEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CEB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CEB, from MSDmotif at EBI
  • Genome occurence of 1CEB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ceba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1cebb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ceb] [1ceb_A] [1ceb_B]
  • SWISS-PROT database: [P00747]
  • Domain organization of [PLMN_HUMAN] by SWISSPFAM
  • Domain found in 1CEB: [KR ] by SMART
  • Other resources with information on 1CEB
  • Community annotation for 1CEB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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