1PKR Plasminogen date Aug 03, 1993
title The Structure Of Recombinant Plasminogen Kringle 1 And The Fibrin Binding Site
authors T.P.Wu, A.Tulinsky
compound source
Molecule: Plasminogen
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.930 58.930 54.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand CL enzyme
related structures by homologous chain: 1CEB, 1HPJ
Primary referenceThe structure of recombinant plasminogen kringle 1 and the fibrin binding site., Wu TP, Padmanabhan KP, Tulinsky A, Blood Coagul Fibrinolysis 1994 Apr;5(2):157-66. PMID:8054447
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1pkr.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1PKR
  • CSU: Contacts of Structural Units for 1PKR
  • Likely Quarternary Molecular Structure file(s) for 1PKR
  • Retrieve 1PKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PKR from S2C, [Save to disk]
  • View 1PKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PKR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PKR, from MSDmotif at EBI
  • Genome occurence of 1PKR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pkr__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1pkr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pkr] [1pkr_A]
  • SWISS-PROT database: [P00747]
  • Domain organization of [PLMN_HUMAN] by SWISSPFAM
  • Domain found in 1PKR: [KR ] by SMART
  • Other resources with information on 1PKR
  • Community annotation for 1PKR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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