1CEE Structural Protein Regulation date Mar 08, 1999
title Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp
authors N.Abdul-Manan, B.Aghazadeh, G.A.Liu, A.Majumdar, O.Ouerfelli, M.K.Rosen
compound source
Molecule: Gtp-Binding Rho-Like Protein
Chain: A
Fragment: Cdc42
Synonym: Cell Division Cycle 42, Pcdc42
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet11a

Molecule: Wiskott-Aldrich Syndrome Protein Wasp
Chain: B
Fragment: Gtpase Binding Domain Of Wasp
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet11a
methodSolution NMR
ligand GCP, MG enzyme
note 1CEE is a representative structure
related structures by homologous chain: 1AJE, 1CF4, 1EJ5
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of Cdc42 in complex with the GTPase-binding domain of the 'Wiskott-Aldrich syndrome' protein., Abdul-Manan N, Aghazadeh B, Liu GA, Majumdar A, Ouerfelli O, Siminovitch KA, Rosen MK, Nature 1999 May 27;399(6734):379-83. PMID:10360578
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1292 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1CEE
  • CSU: Contacts of Structural Units for 1CEE
  • Retrieve 1CEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CEE from S2C, [Save to disk]
  • View 1CEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CEE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1CEE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ceea_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1cee from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cee_B] [1cee] [1cee_A]
  • SWISS-PROT database: [P60953] [P42768]
  • Domain organization of [CDC42_HUMAN] [WASP_HUMAN] by SWISSPFAM
  • Domains found in 1CEE: [PBD] [RHO ] by SMART
  • Alignments of the sequence of 1CEE with the sequences similar proteins can be viewed for 1CEE's classification [CDC42_HUMAN] [WASP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CDC42_HUMAN] [WASP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1CEE
  • Community annotation for 1CEE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CEE from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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