1EJ5 Blood Clotting date Feb 29, 2000
title Solution Structure Of The Autoinhibited Conformation Of Wasp
authors A.S.Kim, L.T.Kakalis, N.Abdul-Manan, G.A.Liu, M.K.Rosen
compound source
Molecule: Wiskott-Aldrich Syndrome Protein
Chain: A
Synonym: Wasp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet11a
methodSolution NMR
related structures by homologous chain: 1CEE, 1T84
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAutoinhibition and activation mechanisms of the Wiskott-Aldrich syndrome protein., Kim AS, Kakalis LT, Abdul-Manan N, Liu GA, Rosen MK, Nature 2000 Mar 9;404(6774):151-8. PMID:10724160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (529 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1EJ5
  • Retrieve 1EJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EJ5 from S2C, [Save to disk]
  • View 1EJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ej5a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ej5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ej5_A] [1ej5]
  • SWISS-PROT database: [P42768]
  • Domain organization of [WASP_HUMAN] by SWISSPFAM
  • Domain found in 1EJ5: [PBD ] by SMART
  • Alignments of the sequence of 1EJ5 with the sequences similar proteins can be viewed for 1EJ5's classification [WASP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [WASP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1EJ5
  • Community annotation for 1EJ5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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