1CFM Electron Transport date Sep 18, 1998
title Cytochrome F From Chlamydomonas Reinhardtii
authors Y.I.Chi, L.S.Huang, Z.Zhang, J.G.Fernandez-Velasco, R.Malkin, E.A
compound source
Molecule: Cytochrome F
Chain: A, B, C
 Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055
Strain: F283st
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.624 94.943 119.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand HEM enzyme
related structures by homologous chain: 1CTM, 1HCZ
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceX-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii., Chi YI, Huang LS, Zhang Z, Fernandez-Velasco JG, Berry EA, Biochemistry. 2000 Jul 4;39(26):7689-701. PMID:10869174
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (1cfm.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 1CFM
  • CSU: Contacts of Structural Units for 1CFM
  • Likely Quarternary Molecular Structure file(s) for 1CFM
  • Structure Factors (435 Kb)
  • Retrieve 1CFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CFM from S2C, [Save to disk]
  • Re-refined 1cfm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CFM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CFM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cfma1, region A:1-168,A:233-251 [Jmol] [rasmolscript] [script source]
        - Domain d1cfma2, region A:169-232 [Jmol] [rasmolscript] [script source]
        - Domain d1cfmb1, region B:1-168,B:233-251 [Jmol] [rasmolscript] [script source]
        - Domain d1cfmb2, region B:169-232 [Jmol] [rasmolscript] [script source]
        - Domain d1cfmc1, region C:1-168,C:233-251 [Jmol] [rasmolscript] [script source]
        - Domain d1cfmc2, region C:169-232 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cfm_A] [1cfm] [1cfm_B] [1cfm_C]
  • SWISS-PROT database: [P23577]
  • Domain organization of [CYF_CHLRE] by SWISSPFAM
    • Other resources with information on 1CFM
  • Community annotation for 1CFM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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