1CGO Electron Transport (Cytochrome) date May 01, 1995
title Cytochrome C'
authors A.J.Dobbs, H.R.Faber, B.F.Anderson, E.N.Baker
compound source
Molecule: Cytochrome C
Chain: A
Engineered: Yes
 Organism_scientific: Alcaligenes Sp.
Organism_taxid: 512
symmetry Space Group: P 65 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.400 54.400 181.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand HEC, PCA enzyme
related structures by homologous chain: 1E84, 1E85
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of cytochrome c' from two Alcaligenes species and the implications for four-helix bundle structures., Dobbs AJ, Anderson BF, Faber HR, Baker EN, Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):356-68. PMID:15299707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1cgo.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1CGO
  • CSU: Contacts of Structural Units for 1CGO
  • Likely Quarternary Molecular Structure file(s) for 1CGO
  • Structure Factors (104 Kb)
  • Retrieve 1CGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CGO from S2C, [Save to disk]
  • Re-refined 1cgo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CGO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CGO, from MSDmotif at EBI
  • Genome occurence of 1CGO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cgo__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cgo_A] [1cgo]
  • SWISS-PROT database: [P00138]
  • Domain organization of [CYCP_ALCXX] by SWISSPFAM
    • Other resources with information on 1CGO
  • Community annotation for 1CGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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