1E85 Electron Transport date Sep 15, 2000
title Cytochrome C' From Alcaligenes Xylosoxidans - Reduced Struct No Bound To Proximal Side Of Heme
authors D.M.Lawson, C.E.M.Stevenson, C.R.Andrew, R.R.Eady
compound source
Molecule: Cytochrome C'
Chain: A
 Organism_scientific: Achromobacter Xylosoxidans
Organism_taxid: 85698
Strain: Ncib 11015
Cellular_location: Periplasm
Other_details: Formerly Known As Alcaligenes Sp.
symmetry Space Group: P 65 2 2
R_factor 0.194 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.035 53.035 180.993 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.35 Å
ligand HEC, NO, PCA enzyme
related structures by homologous chain: 1CGO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnprecedented proximal binding of nitric oxide to heme: implications for guanylate cyclase., Lawson DM, Stevenson CE, Andrew CR, Eady RR, EMBO J 2000 Nov 1;19(21):5661-71. PMID:11060017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1e85.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1E85
  • CSU: Contacts of Structural Units for 1E85
  • Likely Quarternary Molecular Structure file(s) for 1E85
  • Structure Factors (286 Kb)
  • Retrieve 1E85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E85 from S2C, [Save to disk]
  • Re-refined 1e85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1E85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E85
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1E85 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E85, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e85a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e85] [1e85_A]
  • SWISS-PROT database: [P00138]
  • Domain organization of [CYCP_ALCXX] by SWISSPFAM
    • Other resources with information on 1E85
  • Community annotation for 1E85 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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